Glyma02g38870 - SoyBase

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Report for Sequence Feature Glyma02g38870

Feature Type:	gene_model
Chromosome:	Gm02
Start:	44217249
stop:	44224728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g38870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07650	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 9 \| chr3:2442494-2443901 FORWARD LENGTH=372	SoyBase	E_val: 9.00E-149	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0048579	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7KE22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=1 Tax=Medicago truncatula RepID=G7KE22_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JH98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JH98_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g38870

Locus	Gene Symbol	Protein Name
	COL8	Constans-like 8

Expression Patterns of Glyma02g38870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g38870

Paralog	Evidence	Comments
Glyma14g36930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g38870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g223700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g38870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g38870

Limit To All Plant Sequences

>Glyma02g38870.2   sequence type=transcript   gene model=Glyma02g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTTTTCCCTTCTTCCCATTGCTCATGTCACATTCCCTACAATATTGCATTATTCTCACACTCACACCTACACCAACCCTCACCATCATATCTGATCTAAAATCTGCCTATTCCTATCTATCTGAACAGAGCAGAGGAGAGAGAGAAACACACAGTCACACACACAACACAAAACACAAAAGGGTCTCTGATTGTTCTCTTGAAAAGTCCAGCTTCCACCACCACCACCTCTCTAGGGTTCCTTTGCTTTCAATGTTTGCATAAAAATATCATTTCTATATTGTTTTTCTGAAAAAAAGCAACAGAGGCCTTTTCCTTACCGATCTTGTCCTCTCTCTGTCTTTCTTGCCATATGCTGAGTTTGCTGAACTGAATTGAATTGTAGCTTCCTTCATCACATTCTCCAACATCTTATTCAGGAATAAAAGAAGAGGCAGTTTAAAGATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATTCCGCGTGCTTATGTTTGTCATGCGATCGAAATGTTCATTCTGCCAATGCACTTTCTAGGCGTCATTCGAGAACCCTTGTATGCGAGAGATGCAATTCACAACCTGCATTTGTGAGGTCTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCGTCTTCTTCGATGCACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGACATCCCTTCTTTGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACATTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAACTGAAGTGACTGATCTACCCAGCAAGGGTAAATCTTGGGCTGGCACACCTTCAATACCTGAGTCAAGCTCAGAACCTCGTATTCTGGACCAGCCGCCTGGACCTGCCAATGAATGTGTGCCCAAGTTGTACTGTCCTGGGAAGAAAGCTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTTGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGGATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTAATAGCTTATTTGAGGCAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGGGTTGGTCAATCCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAGTGATGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCAATCAAACATTTCCTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGAAGCAATGCTGTCATGCGCTACAAGGAAAAAAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGATATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGATTTGTCAAAGCTGGTGATGTCTATGACTATGACCCTTTGAACCAAACCAGAAGCTACTGAGTGGGCATAAATTTTCTTCACGGGGAAGAAGGTTGTAAGCAGGCCCTTGTCCAATGAAATTGACAGTGTAAAAGCTCAGGAGCAAAGATTGTGTGTCCTTCACTGCAATGGACATTCTCAGTTGCAATTTCAGCCGACATGACAGCATCATCACAAACTGCCCCCCTTCAGGCAATGTGTCATGAATTTTGGTTGCCCTTCTGTTTAACTTGGCAAAATCCTGCTTCTTAATACTAATCTAATGCAAAATTCTTTTTTAAGCCCTTTGGCCTTGATCTTGCTCATAGTTTGTCATATTTTATGTCAACTCCTCACTGATCCCGAGTCACATGTACAAGTGTGCCTATGATGGCATGATAAGTGGCTCAATTTGATAAGTTCTAGACAATCTTCTACACTGTTGTAGGAATATTTTGTCCCTCTCTCTTTTGCCATGTATAGTGCAGAATATACATAAATGCAGTTAGAGGTGTAATGACCCAACAGTTCCTTAGGTATGACAAATTGTAAATTTGAAGGTTATTTATGTATAGAATAGGATGCTGCTATTGCTATTTATTTTGATGACACAACATTCTATATTTTTGGACATGTATCCATAAAAGTTTTGTTTGTATTTTATTTGATTTGATTGCCATGGATACACTTCAATTGCATGGCATATTTACTTCAATTGTAATTGTGAGTCACTTCTAAGAAAAAGAAACCCTATTACTGAAGAACATTGTGCATTGTGTATAAGAAATCGATGAGTAAAAGATGTTTTGTGTGTAA

Coding sequences of Glyma02g38870

Limit To All Plant Sequences

>Glyma02g38870.1   sequence type=CDS   gene model=Glyma02g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATTCCGCGTGCTTATGTTTGTCATGCGATCGAAATGTTCATTCTGCCAATGCACTTTCTAGGCGTCATTCGAGAACCCTTGTATGCGAGAGATGCAATTCACAACCTGCATTTGTGAGGTCTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCGTCTTCTTCGATGCACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGACATCCCTTCTTTGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACATTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAACTGAAGTGACTGATCTACCCAGCAAGGGTAAATCTTGGGCTGGCACACCTTCAATACCTGAGTCAAGCTCAGAACCTCGTATTCTGGACCAGCCGCCTGGACCTGCCAATGAATGTGTGCCCAAGTTGTACTGTCCTGGGAAGAAAGCTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTTGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGGATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTAATAGCTTATTTGAGGCAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGGGTTGGTCAATCCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAGTGATGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCAATCAAACATTTCCTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGAAGCAATGCTGTCATGCGCTACAAGGAAAAAAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGATATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGATTTGTCAAAGCTGGTGATGTCTATGACTATGACCCTTTGAACCAAACCAGAAGCTACTGA

>Glyma02g38870.2   sequence type=CDS   gene model=Glyma02g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTACTTATGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGATTCCGCGTGCTTATGTTTGTCATGCGATCGAAATGTTCATTCTGCCAATGCACTTTCTAGGCGTCATTCGAGAACCCTTGTATGCGAGAGATGCAATTCACAACCTGCATTTGTGAGGTCTGTTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCTCACCGTCTTCTTCGATGCACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCGGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGACATCCCTTCTTTGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACATTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAACTGAAGTGACTGATCTACCCAGCAAGGGTAAATCTTGGGCTGGCACACCTTCAATACCTGAGTCAAGCTCAGAACCTCGTATTCTGGACCAGCCGCCTGGACCTGCCAATGAATGTGTGCCCAAGTTGTACTGTCCTGGGAAGAAAGCTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTCATCATGGATGAAGTTGATCTAGAACTTGAGAACTATGAGGAACTTTTTGGGATGGCTCTCAGTCACTCTGAAGAGCTTTTTGAAAATGGTGGAATTAATAGCTTATTTGAGGCAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGATCGTCTGCTGGGTTGGTCAATCCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAGTGATGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCAATCAAACATTTCCTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAACCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCTAACCGAAGCAATGCTGTCATGCGCTACAAGGAAAAAAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGATATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGCCGATTTGTCAAAGCTGGTGATGTCTATGACTATGACCCTTTGAACCAAACCAGAAGCTACTGA

Predicted protein sequences of Glyma02g38870

Limit To All Plant Sequences

>Glyma02g38870.1   sequence type=predicted peptide   gene model=Glyma02g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYLCDFCGDQRSLVYCRSDSACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRSVEEKISLCQNCDWLGHGTSPSSSMHKRQSINCYSGCPSAAEFSSIWSFFLDIPSLGEACEQELGLMSINENIPPEGQNVSGSTEVTDLPSKGKSWAGTPSIPESSSEPRILDQPPGPANECVPKLYCPGKKASGICEDDDLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGINSLFEAKDMSASAGDSHCQGAVAAEGSSAGLVNPIQPACSNAASADSVMSTKTEPIVCFTARQSQSNISFSGVTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGDVYDYDPLNQTRSY*

>Glyma02g38870.2   sequence type=predicted peptide   gene model=Glyma02g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGYLCDFCGDQRSLVYCRSDSACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRSVEEKISLCQNCDWLGHGTSPSSSMHKRQSINCYSGCPSAAEFSSIWSFFLDIPSLGEACEQELGLMSINENIPPEGQNVSGSTEVTDLPSKGKSWAGTPSIPESSSEPRILDQPPGPANECVPKLYCPGKKASGICEDDDLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGINSLFEAKDMSASAGDSHCQGAVAAEGSSAGLVNPIQPACSNAASADSVMSTKTEPIVCFTARQSQSNISFSGVTKDSAGDYQDCGASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGDVYDYDPLNQTRSY*

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